2D25

C-C-A-G-G-C-M5C-T-G-G; HELICAL FINE STRUCTURE, HYDRATION, AND COMPARISON WITH C-C-A-G-G-C-C-T-G-G


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICRODIALYSIS7.5277pH 7.50, MICRODIALYSIS, temperature 277.00K
Crystal Properties
Matthews coefficientSolvent content
2.3447.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.77α = 90
b = 53.77β = 90
c = 34.35γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayDIFFRACTOMETERENRAF-NONIUS CAD4
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR571

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.758720947042

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION1.758237990.174
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it4.28
n_phos_angle_it4.05
n_phos_bond_it2.98
n_sugar_bond_it2.82
n_multtor_nbd0.2
n_singtor_nbd0.143
n_chiral_restr0.087
n_phos_bond_angle_d0.064
n_phos_bond_d0.045
n_sugar_bond_angle_d0.04
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it4.28
n_phos_angle_it4.05
n_phos_bond_it2.98
n_sugar_bond_it2.82
n_multtor_nbd0.2
n_singtor_nbd0.143
n_chiral_restr0.087
n_phos_bond_angle_d0.064
n_phos_bond_d0.045
n_sugar_bond_angle_d0.04
n_plane_restr0.025
n_sugar_bond_d0.016
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms404
Solvent Atoms80
Heterogen Atoms8

Software

Software
Software NamePurpose
NUCLSQrefinement