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Structure of F-actin binding domain IMD of MIM (Missing In Metastasis)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 277 lithium chloride, PEG2000 MME, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.43 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.503 α = 90 b = 37.319 β = 94.07 c = 129.016 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-03-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.97908, 1.0 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 48.1 98.7 0.057 30.4 10.7 43473 43473
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 88.4 0.38 3.6 4.5 3873
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 48.1 2 41282 2197 98.7 0.18577 0.18344 0.1842 0.22829 0.228 RANDOM 33.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.55 1.32 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.685 r_dihedral_angle_3_deg 15.279 r_dihedral_angle_4_deg 14.493 r_scangle_it 4.514 r_dihedral_angle_1_deg 4.086 r_scbond_it 3.108 r_mcangle_it 3.014 r_mcbond_it 2.27 r_angle_refined_deg 1.127 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.685 r_dihedral_angle_3_deg 15.279 r_dihedral_angle_4_deg 14.493 r_scangle_it 4.514 r_dihedral_angle_1_deg 4.086 r_scbond_it 3.108 r_mcangle_it 3.014 r_mcbond_it 2.27 r_angle_refined_deg 1.127 r_nbtor_refined 0.312 r_xyhbond_nbd_refined 0.271 r_symmetry_hbond_refined 0.233 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.216 r_chiral_restr 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3792 Nucleic Acid Atoms Solvent Atoms 392 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SnB phasing SOLVE phasing DM phasing