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Ternary complex of the WH2 domain of mim with actin-dnase I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A41 PDB entry 2a41
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 sodium formate, PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.093 α = 90 b = 75.487 β = 90 c = 228.991 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 1.0 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 41.4 88.7 0.072 25.8 8.9 23598 23598
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 80.1 0.232 7.2 5.1 2069
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2a41 2.5 41.4 2 22339 1165 89.6 0.22047 0.21712 0.2177 0.28412 0.2857 RANDOM 58.805
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -1.31 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.12 r_dihedral_angle_4_deg 19.94 r_dihedral_angle_3_deg 19.472 r_dihedral_angle_1_deg 6.531 r_mcangle_it 3.172 r_scangle_it 2.836 r_mcbond_it 2.132 r_scbond_it 2.099 r_angle_refined_deg 1.388 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.12 r_dihedral_angle_4_deg 19.94 r_dihedral_angle_3_deg 19.472 r_dihedral_angle_1_deg 6.531 r_mcangle_it 3.172 r_scangle_it 2.836 r_mcbond_it 2.132 r_scbond_it 2.099 r_angle_refined_deg 1.388 r_nbtor_refined 0.309 r_metal_ion_refined 0.256 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.223 r_symmetry_hbond_refined 0.177 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5171 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing