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Structure of Francisella tularensis Acid Phosphatase A (AcpA) bound to orthovanadate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 PEG 1500, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.2 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.081 α = 90 b = 144.399 β = 90 c = 123.859 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 160 CCD ADSC QUANTUM 210 2004-07-01 M SINGLE WAVELENGTH 2 1 x-ray 160 CCD SBC-3 2004-08-01 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.127129 ALS 8.3.1 2 SYNCHROTRON APS BEAMLINE 19-ID 1.6531 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.75 50 97.2 0.047 4.1 98137 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.75 1.81 94.9 0.357 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 44.28 98094 4923 100 0.2 0.198 0.2634 0.231 0.28 RANDOM 25.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 -0.91 -1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.989 r_dihedral_angle_4_deg 19.924 r_dihedral_angle_3_deg 13.025 r_dihedral_angle_1_deg 7.775 r_scangle_it 1.885 r_angle_refined_deg 1.683 r_scbond_it 1.39 r_mcangle_it 0.777 r_mcbond_it 0.499 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.989 r_dihedral_angle_4_deg 19.924 r_dihedral_angle_3_deg 13.025 r_dihedral_angle_1_deg 7.775 r_scangle_it 1.885 r_angle_refined_deg 1.683 r_scbond_it 1.39 r_mcangle_it 0.777 r_mcbond_it 0.499 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.201 r_metal_ion_refined 0.198 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7511 Nucleic Acid Atoms Solvent Atoms 550 Heterogen Atoms 90
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing CNS refinement REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction