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Crystal Structure Analysis of the Diheme c-type Cytochrome DHC2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.3 45.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.645 α = 90 b = 55.679 β = 105.91 c = 39.637 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH 2004-07-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9941, 1.7394, 1.7414 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 38.12 26375
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 38.12 23298 1198 91.93 0.22399 0.22147 0.222 0.27237 0.2145 RANDOM 29.313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.2 0.53 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.312 r_dihedral_angle_4_deg 18.395 r_dihedral_angle_3_deg 18.372 r_dihedral_angle_1_deg 5.973 r_scangle_it 3.58 r_scbond_it 2.368 r_mcangle_it 1.663 r_angle_refined_deg 1.581 r_mcbond_it 0.924 r_nbd_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.312 r_dihedral_angle_4_deg 18.395 r_dihedral_angle_3_deg 18.372 r_dihedral_angle_1_deg 5.973 r_scangle_it 3.58 r_scbond_it 2.368 r_mcangle_it 1.663 r_angle_refined_deg 1.581 r_mcbond_it 0.924 r_nbd_refined 0.326 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.257 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.105 r_metal_ion_refined 0.048 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1118 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling