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Crystal structure of glutathione transferase zeta 1-1 (maleylacetoacetate isomerase) from Mus musculus (form-1 crystal)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 sodium citrate, sodium cacodylate, dithiothreitol, sodium chloride, Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.967 α = 90 b = 152.134 β = 90 c = 57.051 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2005-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.00000 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 42592
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 50 40428 2152 98.53 0.15745 0.1554 0.1594 0.19618 0.199 RANDOM 11.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.95 -0.68
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.624 r_dihedral_angle_1_deg 5.538 r_scbond_it 3.731 r_mcangle_it 2.114 r_angle_refined_deg 1.516 r_mcbond_it 1.398 r_angle_other_deg 0.918 r_symmetry_hbond_refined 0.342 r_symmetry_vdw_other 0.274 r_chiral_restr 0.244
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.624 r_dihedral_angle_1_deg 5.538 r_scbond_it 3.731 r_mcangle_it 2.114 r_angle_refined_deg 1.516 r_mcbond_it 1.398 r_angle_other_deg 0.918 r_symmetry_hbond_refined 0.342 r_symmetry_vdw_other 0.274 r_chiral_restr 0.244 r_nbd_other 0.243 r_nbd_refined 0.242 r_xyhbond_nbd_refined 0.207 r_symmetry_vdw_refined 0.199 r_nbtor_other 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1674 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing