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Crystal structure of spin labeled T4 Lysozyme (V131R1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C6T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 278 potassium phosphate, sodium phospahte, sodium choloride, sodium azide, oxidized beta-mercaptoehtanol, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.64 53.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.405 α = 90 b = 60.405 β = 90 c = 96.055 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2002-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 100 99.8 0.055 48.9 18 21086 21086 33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 100 0.368 8.1 2062
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1C6T 1.75 51.99 19921 19921 1081 99.78 0.19238 0.19238 0.19066 0.1887 0.22396 0.2225 RANDOM 21.049
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 0.31 0.62 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.365 r_dihedral_angle_4_deg 10.862 r_dihedral_angle_3_deg 9.363 r_scangle_it 2.733 r_dihedral_angle_1_deg 2.659 r_scbond_it 1.816 r_angle_refined_deg 1.658 r_mcangle_it 1.024 r_mcbond_it 0.621 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.365 r_dihedral_angle_4_deg 10.862 r_dihedral_angle_3_deg 9.363 r_scangle_it 2.733 r_dihedral_angle_1_deg 2.659 r_scbond_it 1.816 r_angle_refined_deg 1.658 r_mcangle_it 1.024 r_mcbond_it 0.621 r_nbtor_refined 0.293 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.166 r_symmetry_hbond_refined 0.15 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1308 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing