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Crystal Structure of the Putative Oxidoreductase from Salmonella typhimurium LT2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 Succinic acid, HEPES, PEG MME 2000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 4 69.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.801 α = 90 b = 110.801 β = 90 c = 105.64 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2004-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 0.123 11.9 10.4 17337 16967
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 100 0.848 5.2 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 95.78 15290 15290 1727 99.87 0.1927 0.18759 0.1889 0.23749 0.2392 RANDOM 59.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 0.57 1.14 -1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.747 r_dihedral_angle_4_deg 22.663 r_dihedral_angle_3_deg 21.371 r_dihedral_angle_1_deg 7.063 r_scangle_it 2.2 r_angle_refined_deg 1.521 r_scbond_it 1.311 r_mcangle_it 1.113 r_mcbond_it 0.619 r_nbd_refined 0.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.747 r_dihedral_angle_4_deg 22.663 r_dihedral_angle_3_deg 21.371 r_dihedral_angle_1_deg 7.063 r_scangle_it 2.2 r_angle_refined_deg 1.521 r_scbond_it 1.311 r_mcangle_it 1.113 r_mcbond_it 0.619 r_nbd_refined 0.234 r_symmetry_vdw_refined 0.207 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.156 r_chiral_restr 0.104 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_metal_ion_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3301 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing SOLVE phasing RESOLVE phasing