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RimI - Ribosomal S18 N-alpha-protein acetyltransferase in complex with acetylCoA.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 15-30% PEG400 (W TO V), 200 MM K/PHOSPHATE, PH 4-5.5
Crystal Properties Matthews coefficient Solvent content 3.1 60.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.663 α = 90 b = 133.663 β = 90 c = 192.156 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE MARRESEARCH RAXIS IV OSMIC CONFOCAL MAXFLUX OPTICS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 40 100 0.06 42.8 19.6 21895
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.57 100 0.32 10.6 19.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.5 99.01 21895 1185 100 0.206 0.203 0.2037 0.262 0.261 RANDOM 32.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.33 0.67 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.069 r_dihedral_angle_4_deg 18.377 r_dihedral_angle_3_deg 16.469 r_dihedral_angle_1_deg 6.33 r_scangle_it 2.836 r_scbond_it 1.791 r_angle_refined_deg 1.487 r_mcangle_it 1.055 r_mcbond_it 0.608 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.069 r_dihedral_angle_4_deg 18.377 r_dihedral_angle_3_deg 16.469 r_dihedral_angle_1_deg 6.33 r_scangle_it 2.836 r_scbond_it 1.791 r_angle_refined_deg 1.487 r_mcangle_it 1.055 r_mcbond_it 0.608 r_nbtor_refined 0.315 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3606 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 168
Software Software Software Name Purpose CCP4 model building CCP4 data scaling SOLVE phasing RESOLVE phasing AMoRE phasing CCP4 phasing REFMAC refinement