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RimI - Ribosomal S18 N-alpha-protein acetyltransferase in complex with a bisubstrate inhibitor (Cterm-Arg-Arg-Phe-Tyr-Arg-Ala-N-alpha- acetyl-S-CoA).
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 15% PEG400 (W/V), 100 MM NACITRATE PH 5.5, 100 MM (NH4)2SO4
Crystal Properties Matthews coefficient Solvent content 3.1 60.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.127 α = 90 b = 133.127 β = 90 c = 190.986 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE MARRESEARCH RAXIS IV OSMIC CONFOCAL MAXFLUX OPTICS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 100 0.07 19.4 4.4 19233
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 100 0.32 4.5 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.6 98.53 19233 1037 100 0.196 0.193 0.1945 0.257 0.252 RANDOM 28.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.27 0.55 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.073 r_dihedral_angle_3_deg 16.091 r_dihedral_angle_4_deg 15.605 r_dihedral_angle_1_deg 6.192 r_scangle_it 2.899 r_scbond_it 1.761 r_angle_refined_deg 1.602 r_mcangle_it 1.02 r_mcbond_it 0.584 r_symmetry_vdw_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.073 r_dihedral_angle_3_deg 16.091 r_dihedral_angle_4_deg 15.605 r_dihedral_angle_1_deg 6.192 r_scangle_it 2.899 r_scbond_it 1.761 r_angle_refined_deg 1.602 r_mcangle_it 1.02 r_mcbond_it 0.584 r_symmetry_vdw_refined 0.326 r_nbtor_refined 0.314 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3801 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing