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Ring1b-Bmi1 E3 catalytic domain structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 10% PEG3350, 0.1M NAI, 0.05M BIS-TRIS-PROPANE PH7.5, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.4 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.046 α = 90 b = 120.046 β = 90 c = 27.096 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-06-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.9 0.11 5.9 10.3 15568 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.9 0.73 1 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 30 14759 781 99.8 0.181 0.179 0.213 0.2654 RANDOM 41.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.15 0.3 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.6 r_dihedral_angle_4_deg 17.834 r_dihedral_angle_3_deg 15.662 r_dihedral_angle_1_deg 6.15 r_scangle_it 3.55 r_scbond_it 2.304 r_angle_refined_deg 1.565 r_mcangle_it 1.481 r_mcbond_it 0.896 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.6 r_dihedral_angle_4_deg 17.834 r_dihedral_angle_3_deg 15.662 r_dihedral_angle_1_deg 6.15 r_scangle_it 3.55 r_scbond_it 2.304 r_angle_refined_deg 1.565 r_mcangle_it 1.481 r_mcbond_it 0.896 r_nbtor_refined 0.306 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.153 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1562 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing