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Structure of Ulilysin, a member of the pappalysin family of metzincin metalloendopeptidases.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 EQUIVOLUMETRIC SITTING DROPS CONSISTING OF PROTEIN (5 MG PER ML IN 30MM TRIS PH 7.5, 2MM DTT, 100MM NACL) AND RESERVOIR SOLUTION (18% PEG 8000, 0.1M MES PH6.5, 0.2M CACL2) AFTER SEVERAL WEEKS AT 20 DEGREES CELCIUS.
Crystal Properties Matthews coefficient Solvent content 2.4 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.564 α = 90 b = 126.148 β = 90 c = 87.406 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 39 99.8 0.08 11.6 5.9 61061
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 99.9 0.44 3.4 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 39 60401 610 99.8 0.174 0.173 0.1772 0.241 0.237 RANDOM 19.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.89 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.24 r_dihedral_angle_4_deg 12.706 r_dihedral_angle_3_deg 12.541 r_dihedral_angle_1_deg 6.161 r_scangle_it 3.527 r_scbond_it 2.342 r_angle_refined_deg 1.286 r_mcangle_it 1.255 r_mcbond_it 0.912 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.24 r_dihedral_angle_4_deg 12.706 r_dihedral_angle_3_deg 12.541 r_dihedral_angle_1_deg 6.161 r_scangle_it 3.527 r_scbond_it 2.342 r_angle_refined_deg 1.286 r_mcangle_it 1.255 r_mcbond_it 0.912 r_nbtor_refined 0.308 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.149 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4078 Nucleic Acid Atoms Solvent Atoms 597 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling