X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1TGZPDB ENTRY 1TGZ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15pH 5.00
Crystal Properties
Matthews coefficientSolvent content
6.0679.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 143.376α = 90
b = 143.376β = 90
c = 71.886γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.21201000.08819.68.313469
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.31000.4363.38.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1TGZ3.2124.0313469716990.2490.2450.294RANDOM129.72
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-11.71-5.85-11.7117.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.728
r_dihedral_angle_3_deg20.946
r_dihedral_angle_4_deg18.025
r_dihedral_angle_1_deg6.115
r_angle_refined_deg1.256
r_scangle_it1.122
r_scbond_it0.712
r_mcangle_it0.542
r_nbtor_refined0.312
r_mcbond_it0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.728
r_dihedral_angle_3_deg20.946
r_dihedral_angle_4_deg18.025
r_dihedral_angle_1_deg6.115
r_angle_refined_deg1.256
r_scangle_it1.122
r_scbond_it0.712
r_mcangle_it0.542
r_nbtor_refined0.312
r_mcbond_it0.307
r_symmetry_vdw_refined0.244
r_nbd_refined0.243
r_xyhbond_nbd_refined0.152
r_chiral_restr0.095
r_symmetry_hbond_refined0.048
r_bond_refined_d0.01
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2515
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
CCP4phasing