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Lysine aminotransferase from M. tuberculosis in the internal aldimine form with bound substrate 2-ketoglutarate
Crystallization Crystal Properties Matthews coefficient Solvent content 3.08 60.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.347 α = 90 b = 103.347 β = 90 c = 98.305 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20.53 93 0.1 11.9 4.3 38141 20
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 96.5 0.48 2.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 89.44 36201 1938 92.1 0.158 0.156 0.1584 0.191 0.1942 RANDOM 20.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.19 -0.38 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.952 r_dihedral_angle_4_deg 22.511 r_dihedral_angle_3_deg 17.942 r_dihedral_angle_1_deg 5.818 r_scangle_it 4.258 r_scbond_it 2.629 r_angle_refined_deg 1.593 r_mcangle_it 1.511 r_mcbond_it 0.929 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.952 r_dihedral_angle_4_deg 22.511 r_dihedral_angle_3_deg 17.942 r_dihedral_angle_1_deg 5.818 r_scangle_it 4.258 r_scbond_it 2.629 r_angle_refined_deg 1.593 r_mcangle_it 1.511 r_mcbond_it 0.929 r_nbtor_refined 0.306 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.134 r_symmetry_hbond_refined 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3350 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing