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TYPE II DEHYDROQUINASE INHIBITOR COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BT4 PDB ENTRY 2BT4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP PROTEIN AT 6MG/ML WAS EQUILIBRATED AGAINST A SOLUTION 15% PEG 8K, 0.1M HEPES BUFFER PH 7.5 USING THE SITING DROP METHOD.
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 195.755 α = 65.84 b = 195.73 β = 65.89 c = 239.68 γ = 89.97
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2005-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 65 90.6 0.11 7.1 1.88 1334888 25.21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 78.2 0.69 1.3 1.82
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BT4 1.95 25 1532275 80795 76.2 0.277 0.274 0.2984 0.334 0.3014 RANDOM 31.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.59 -0.21 -0.36 -0.63 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.68 r_dihedral_angle_3_deg 18.795 r_dihedral_angle_4_deg 17.771 r_dihedral_angle_1_deg 8.145 r_scangle_it 3.301 r_scbond_it 2.341 r_angle_refined_deg 1.967 r_mcangle_it 1.55 r_mcbond_it 0.931 r_symmetry_vdw_refined 0.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.68 r_dihedral_angle_3_deg 18.795 r_dihedral_angle_4_deg 17.771 r_dihedral_angle_1_deg 8.145 r_scangle_it 3.301 r_scbond_it 2.341 r_angle_refined_deg 1.967 r_mcangle_it 1.55 r_mcbond_it 0.931 r_symmetry_vdw_refined 0.347 r_nbtor_refined 0.321 r_symmetry_hbond_refined 0.303 r_xyhbond_nbd_refined 0.299 r_nbd_refined 0.271 r_chiral_restr 0.123 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13452 Nucleic Acid Atoms Solvent Atoms 1561 Heterogen Atoms 424
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing