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chloroperoxidase complexed with nitrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CPO PDB ENTRY 1CPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 50 MM MG(NO3)2, 20 % PEG 3000, 0.1 M SODIUM CITRATE PH3.6
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.9 α = 90 b = 150.63 β = 90 c = 100.62 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 98 0.07 18 6.8 43689 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 94.8 0.36 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CPO 1.75 19.74 41504 2185 100 0.174 0.173 0.207 0.205 RANDOM 21.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 -1.95 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_4_deg 17.011 r_dihedral_angle_3_deg 11.939 r_dihedral_angle_1_deg 5.67 r_scangle_it 2.965 r_scbond_it 1.963 r_angle_refined_deg 1.442 r_mcangle_it 1.255 r_mcbond_it 0.756 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_4_deg 17.011 r_dihedral_angle_3_deg 11.939 r_dihedral_angle_1_deg 5.67 r_scangle_it 2.965 r_scbond_it 1.963 r_angle_refined_deg 1.442 r_mcangle_it 1.255 r_mcbond_it 0.756 r_nbtor_refined 0.316 r_symmetry_hbond_refined 0.311 r_symmetry_vdw_refined 0.244 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2316 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms 284
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling AMoRE phasing