☰ Navigation Tabs
chloroperoxidase complexed with acetate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CPO PDB ENTRY 1CPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.6 CRYSTALS WERE SOAKED IN 300 MM ACETIC ACID, 50 MM KBR, 22 % PEG3000, 0.1 M CITRATE PH 3.6 FOR 10 MIN AT ROOM TEMPERATURE
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.46 α = 90 b = 150.82 β = 90 c = 100.39 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 94.7 0.09 9.9 3.8 104573 2 17.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 76.9 0.33 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CPO 1.3 19.78 99342 5231 100 0.149 0.148 0.1593 0.17 0.1785 RANDOM 12.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.96 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.676 r_dihedral_angle_4_deg 13.22 r_dihedral_angle_3_deg 11.235 r_dihedral_angle_1_deg 5.987 r_scangle_it 3.036 r_scbond_it 2.241 r_angle_refined_deg 1.495 r_mcangle_it 1.475 r_mcbond_it 1.202 r_rigid_bond_restr 1.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.676 r_dihedral_angle_4_deg 13.22 r_dihedral_angle_3_deg 11.235 r_dihedral_angle_1_deg 5.987 r_scangle_it 3.036 r_scbond_it 2.241 r_angle_refined_deg 1.495 r_mcangle_it 1.475 r_mcbond_it 1.202 r_rigid_bond_restr 1.096 r_angle_other_deg 0.842 r_mcbond_other 0.497 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.216 r_nbtor_refined 0.185 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.168 r_symmetry_vdw_other 0.162 r_nbtor_other 0.086 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2316 Nucleic Acid Atoms Solvent Atoms 579 Heterogen Atoms 265
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling AMoRE phasing