☰ Navigation Tabs
Crystal structure of the dodecameric ferritin MrgA from B. subtilis 168
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other MRGA MUTANT
Crystallization Crystal Properties Matthews coefficient Solvent content 2.3 46.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.37 α = 90 b = 125.37 β = 90 c = 125.37 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 87.71 95.4 0.08 8.6 4.4 44572 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 88 0.32 2.2 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MRGA MUTANT 2 87.71 41011 1262 95 0.157 0.155 0.1682 0.208 0.217 RANDOM 16.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.704 r_dihedral_angle_4_deg 18.733 r_dihedral_angle_3_deg 12.81 r_dihedral_angle_1_deg 5.2 r_scangle_it 4.199 r_scbond_it 3.129 r_angle_refined_deg 1.772 r_mcangle_it 1.658 r_mcbond_it 1.477 r_angle_other_deg 1.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.704 r_dihedral_angle_4_deg 18.733 r_dihedral_angle_3_deg 12.81 r_dihedral_angle_1_deg 5.2 r_scangle_it 4.199 r_scbond_it 3.129 r_angle_refined_deg 1.772 r_mcangle_it 1.658 r_mcbond_it 1.477 r_angle_other_deg 1.314 r_symmetry_vdw_refined 0.61 r_symmetry_hbond_refined 0.307 r_symmetry_vdw_other 0.302 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.186 r_nbtor_refined 0.185 r_nbd_other 0.174 r_chiral_restr 0.161 r_nbtor_other 0.086 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4685 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing