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Structure of Rv3472(D26N), a function unknown protein from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 293 0.1M HEPES PH7.4, 0.2M MGCL2, 25% PEG400, 20 DEGREES C, pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.339 α = 90 b = 91.917 β = 90 c = 191.987 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRROR 2005-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 37.3 99.6 0.04 24.67 6.5 60209 23.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.69 1.79 98.6 0.32 5.23 5.71
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.69 37.32 57236 2971 100 0.166 0.164 0.1749 0.199 0.2063 THIN SHELLS 22.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.13 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.501 r_dihedral_angle_4_deg 20.434 r_dihedral_angle_3_deg 14.029 r_dihedral_angle_1_deg 6.287 r_scangle_it 4.895 r_scbond_it 3.112 r_mcangle_it 2.146 r_angle_refined_deg 1.755 r_mcbond_it 1.344 r_angle_other_deg 0.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.501 r_dihedral_angle_4_deg 20.434 r_dihedral_angle_3_deg 14.029 r_dihedral_angle_1_deg 6.287 r_scangle_it 4.895 r_scbond_it 3.112 r_mcangle_it 2.146 r_angle_refined_deg 1.755 r_mcbond_it 1.344 r_angle_other_deg 0.895 r_symmetry_vdw_other 0.3 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.204 r_nbd_other 0.193 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.115 r_nbtor_other 0.085 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3668 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms
Software Software Software Name Purpose ARP/wARP model building SCALEPACK data scaling SHELXD phasing SHELXE phasing DM phasing ARP/wARP phasing REFMAC refinement