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Crystal structure of dimeric human cystatin F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 9% PEG 3350, 180 MM ZN ACETATE / ACETIC ACID PH 4.6 .
Crystal Properties Matthews coefficient Solvent content 4.5 72.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.345 α = 90 b = 65.345 β = 90 c = 123.183 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 97.3 0.09 24.2 13 15732 53.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 75.1 0.49 2.1 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 15 14911 784 100 0.218 0.217 0.2817 0.241 0.3044 RANDOM 57.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 2 -3.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.458 r_dihedral_angle_4_deg 23.536 r_dihedral_angle_3_deg 14.717 r_dihedral_angle_1_deg 5.972 r_scangle_it 2.603 r_scbond_it 1.72 r_angle_refined_deg 1.464 r_mcangle_it 0.963 r_mcbond_it 0.593 r_symmetry_vdw_refined 0.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.458 r_dihedral_angle_4_deg 23.536 r_dihedral_angle_3_deg 14.717 r_dihedral_angle_1_deg 5.972 r_scangle_it 2.603 r_scbond_it 1.72 r_angle_refined_deg 1.464 r_mcangle_it 0.963 r_mcbond_it 0.593 r_symmetry_vdw_refined 0.362 r_nbtor_refined 0.305 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.126 r_metal_ion_refined 0.121 r_symmetry_hbond_refined 0.118 r_chiral_restr 0.094 r_symmetry_metal_ion_refined 0.021 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1038 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELX phasing