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Structure of the Epstein-Barr Virus Oncogene BARF1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 1 M AMMONIUM SULPHATE,1-2 % PEG 3350,100 MM BISTRIS/HCL PH 6.0
Crystal Properties Matthews coefficient Solvent content 3.15 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 179.245 α = 90 b = 179.245 β = 90 c = 95.72 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 100 0.06 10.7 5.3 50910 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.23 3.1 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.3 30 48327 2583 100 0.177 0.174 0.1749 0.233 0.2328 RANDOM 30.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.32 -0.64 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.45 r_dihedral_angle_3_deg 19.968 r_dihedral_angle_4_deg 18.876 r_dihedral_angle_1_deg 9.049 r_scangle_it 3.79 r_scbond_it 2.687 r_angle_refined_deg 2.201 r_mcangle_it 1.709 r_mcbond_it 1.04 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.45 r_dihedral_angle_3_deg 19.968 r_dihedral_angle_4_deg 18.876 r_dihedral_angle_1_deg 9.049 r_scangle_it 3.79 r_scbond_it 2.687 r_angle_refined_deg 2.201 r_mcangle_it 1.709 r_mcbond_it 1.04 r_nbtor_refined 0.313 r_nbd_refined 0.301 r_xyhbond_nbd_refined 0.197 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.17 r_chiral_restr 0.163 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5958 Nucleic Acid Atoms Solvent Atoms 533 Heterogen Atoms 168
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling