☰ Navigation Tabs
FACTOR INHIBITING HIF-1 ALPHA with succinate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H2K PDB ENTRY 1H2K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.25M AMMONIUM SULFATE, 100MM HEPES PH7.5, 6% PEG400, 1MM IRON (II) SULFATE, 20MM SUCCINIC ACID, pH 7.50
Crystal Properties Matthews coefficient Solvent content 3.49 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.606 α = 90 b = 86.606 β = 90 c = 145.942 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 34 99.1 0.12 24.1 13.1 767064
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.66 5.5 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H2K 2.4 74.54 19862 2191 98.3 0.21 0.205 0.2869 0.263 0.332 RANDOM 58.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.54 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.642 r_dihedral_angle_3_deg 18.057 r_dihedral_angle_4_deg 17.629 r_dihedral_angle_1_deg 7.988 r_scangle_it 4.311 r_scbond_it 3.137 r_angle_refined_deg 2.13 r_mcangle_it 1.843 r_mcbond_it 1.522 r_angle_other_deg 1.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.642 r_dihedral_angle_3_deg 18.057 r_dihedral_angle_4_deg 17.629 r_dihedral_angle_1_deg 7.988 r_scangle_it 4.311 r_scbond_it 3.137 r_angle_refined_deg 2.13 r_mcangle_it 1.843 r_mcbond_it 1.522 r_angle_other_deg 1.129 r_mcbond_other 0.329 r_symmetry_vdw_other 0.304 r_symmetry_hbond_refined 0.295 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.237 r_nbd_other 0.215 r_nbtor_refined 0.197 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.141 r_nbtor_other 0.1 r_xyhbond_nbd_other 0.054 r_bond_refined_d 0.028 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2763 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing