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SECOND AND THIRD FIBRONECTIN TYPE I MODULE PAIR (CRYSTAL FORM II).
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CG6 PDB ENTRY 2CG6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 WATER AND 0.02% SODIUM AZIDE, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2 38.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.651 α = 90 b = 29.419 β = 90 c = 51.009 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD FIXED RADII TOROIDAL MIRROR 2006-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 29.44 97.5 0.06 6.6 6.8 167693 8.44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.26 96.8 0.32 2.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CG6 1.2 52.63 23388 1258 96.9 0.19 0.189 0.1978 0.219 0.2235 RANDOM 10.38
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 -0.02 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.496 r_dihedral_angle_3_deg 12.956 r_dihedral_angle_4_deg 11.803 r_dihedral_angle_1_deg 7.734 r_scangle_it 2.205 r_scbond_it 1.716 r_angle_refined_deg 1.312 r_mcangle_it 1.291 r_mcbond_it 1.041 r_angle_other_deg 0.891
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.496 r_dihedral_angle_3_deg 12.956 r_dihedral_angle_4_deg 11.803 r_dihedral_angle_1_deg 7.734 r_scangle_it 2.205 r_scbond_it 1.716 r_angle_refined_deg 1.312 r_mcangle_it 1.291 r_mcbond_it 1.041 r_angle_other_deg 0.891 r_symmetry_vdw_refined 0.233 r_nbd_other 0.207 r_symmetry_vdw_other 0.197 r_nbd_refined 0.172 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.13 r_nbtor_other 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 703 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing