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Non-Discriminating Glutamyl-tRNA Synthetase from Thermosynechococcus elongatus in Complex with Glu
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GLN PDB ENTRY 1GLN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 740 MM NA CITRATE, 140 MM CITRIC ACID, 10 MM DTT, pH 5.80
Crystal Properties Matthews coefficient Solvent content 2.97 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.149 α = 90 b = 99.603 β = 91.71 c = 182.407 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2005-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 96.9 0.11 11.2 2.8 46164 3 41.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.55 91.8 0.4 3.4 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GLN 2.45 45.6 43854 2309 100 0.189 0.186 0.1808 0.256 0.249 RANDOM 21.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 0.3 4.04 -3.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.518 r_dihedral_angle_4_deg 17.702 r_dihedral_angle_3_deg 16.402 r_dihedral_angle_1_deg 4.432 r_scangle_it 3.218 r_mcangle_it 3.214 r_scbond_it 2.207 r_mcbond_it 2.161 r_angle_refined_deg 1.54 r_nbtor_refined 0.285
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.518 r_dihedral_angle_4_deg 17.702 r_dihedral_angle_3_deg 16.402 r_dihedral_angle_1_deg 4.432 r_scangle_it 3.218 r_mcangle_it 3.214 r_scbond_it 2.207 r_mcbond_it 2.161 r_angle_refined_deg 1.54 r_nbtor_refined 0.285 r_nbd_refined 0.177 r_symmetry_vdw_refined 0.128 r_symmetry_hbond_refined 0.127 r_xyhbond_nbd_refined 0.124 r_chiral_restr 0.092 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7691 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing