☰ Navigation Tabs
Glutamate-1-semialdehyde 2,1-Aminomutase from Thermosynechococcus elongatus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GSA PDB ENTRY 2GSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100 MM PIPES PH 6.5, 200 MM MAGNESIUM SULFATE, 17% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.16 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.92 α = 90 b = 108.92 β = 90 c = 93.39 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU R-AXIS IV 2004-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 50 99.5 0.14 10.42 4.2 24944 3 48.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.95 99.8 0.43 3.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GSA 2.85 19.96 12865 678 100 0.176 0.173 0.1765 0.22 0.224 RANDOM 29.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.75 -3.75 7.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.656 r_dihedral_angle_4_deg 16.853 r_dihedral_angle_3_deg 16.811 r_dihedral_angle_1_deg 5.007 r_scangle_it 3.666 r_mcangle_it 3.658 r_mcbond_it 2.722 r_scbond_it 2.376 r_angle_refined_deg 1.826 r_angle_other_deg 0.818
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.656 r_dihedral_angle_4_deg 16.853 r_dihedral_angle_3_deg 16.811 r_dihedral_angle_1_deg 5.007 r_scangle_it 3.666 r_mcangle_it 3.658 r_mcbond_it 2.722 r_scbond_it 2.376 r_angle_refined_deg 1.826 r_angle_other_deg 0.818 r_symmetry_hbond_refined 0.264 r_nbd_refined 0.246 r_symmetry_vdw_other 0.211 r_nbtor_refined 0.209 r_nbd_other 0.207 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.151 r_chiral_restr 0.12 r_nbtor_other 0.1 r_bond_refined_d 0.021 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2717 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling EPMR phasing