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CRYSTAL STRUCTURE OF THE HUMAN P21-ACTIVATED KINASE 4 IN COMPLEX WITH CGP74514A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BVA PDB ENTRY 2BVA
Crystallization Crystal Properties Matthews coefficient Solvent content 3.5 64.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.817 α = 90 b = 145.817 β = 90 c = 42.382 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2005-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.7 0.07 12.9 6.76 23590 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 92.2 0.41 4 5.67
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BVA 2.3 103.14 19821 1060 99.6 0.202 0.2 0.1977 0.248 0.2426 RANDOM 30.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.56 -1.56 3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.36 r_dihedral_angle_4_deg 17.733 r_dihedral_angle_3_deg 16.226 r_scangle_it 6.17 r_dihedral_angle_1_deg 5.499 r_scbond_it 4.483 r_mcangle_it 2.558 r_mcbond_it 1.713 r_angle_refined_deg 1.43 r_angle_other_deg 0.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.36 r_dihedral_angle_4_deg 17.733 r_dihedral_angle_3_deg 16.226 r_scangle_it 6.17 r_dihedral_angle_1_deg 5.499 r_scbond_it 4.483 r_mcangle_it 2.558 r_mcbond_it 1.713 r_angle_refined_deg 1.43 r_angle_other_deg 0.941 r_symmetry_vdw_other 0.284 r_symmetry_hbond_refined 0.229 r_nbd_other 0.197 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.191 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.165 r_nbtor_other 0.089 r_chiral_restr 0.07 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2246 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing