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alpha-SPECTRIN SH3 DOMAIN A56S MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1G PDB ENTRY 1H1G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 1.1M AMMONIUM SULPHATE, 90MM SODIUM CITRATE/CITRIC ACID, PH 6.0, 90 MM BIS-TRIS PROPANE, 0.9MM EDTA, 0.9MM DTT, 0.9MM SODIUM AZIDE
Crystal Properties Matthews coefficient Solvent content 2.7 53.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.628 α = 90 b = 42.302 β = 90 c = 49.952 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2000-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 15 89.3 0.06 6.2 4.5 2316 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.6 97.4 0.14 3.6 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H1G 2.54 14.92 2212 104 90.8 0.248 0.246 0.2596 0.288 0.3011 RANDOM 19.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 -0.48 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.258 r_dihedral_angle_3_deg 18.89 r_dihedral_angle_4_deg 7.046 r_dihedral_angle_1_deg 5.522 r_scangle_it 2.369 r_scbond_it 1.563 r_angle_refined_deg 1.339 r_mcangle_it 1.286 r_mcbond_it 0.701 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.258 r_dihedral_angle_3_deg 18.89 r_dihedral_angle_4_deg 7.046 r_dihedral_angle_1_deg 5.522 r_scangle_it 2.369 r_scbond_it 1.563 r_angle_refined_deg 1.339 r_mcangle_it 1.286 r_mcbond_it 0.701 r_nbtor_refined 0.312 r_nbd_refined 0.295 r_xyhbond_nbd_refined 0.163 r_symmetry_vdw_refined 0.143 r_chiral_restr 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 448 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing