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structure of agarase carbohydrate binding module in complex with neoagarohexaose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2 M NACL, 16-20 % PEG 4000, BUFFERED TO PH 7.5 WITH 100 MM TRIS/HCL.
Crystal Properties Matthews coefficient Solvent content 2.49 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.036 α = 90 b = 54.979 β = 90 c = 196.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2005-05-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97910,0.97565,0.97950 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 96.12 69.5 0.11 16.9 6.3 35218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 11.3 0.14 3.7 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.64 98.53 47616 2565 69.4 0.179 0.176 0.1765 0.241 0.2407 RANDOM 15.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.86 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.124 r_dihedral_angle_3_deg 12.624 r_dihedral_angle_1_deg 8.477 r_dihedral_angle_4_deg 7.035 r_scangle_it 3.47 r_scbond_it 2.566 r_angle_refined_deg 1.875 r_mcangle_it 1.663 r_mcbond_it 1.179 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.124 r_dihedral_angle_3_deg 12.624 r_dihedral_angle_1_deg 8.477 r_dihedral_angle_4_deg 7.035 r_scangle_it 3.47 r_scbond_it 2.566 r_angle_refined_deg 1.875 r_mcangle_it 1.663 r_mcbond_it 1.179 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.21 r_symmetry_hbond_refined 0.177 r_chiral_restr 0.148 r_xyhbond_nbd_refined 0.142 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4083 Nucleic Acid Atoms Solvent Atoms 599 Heterogen Atoms 302
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing