2CD7

Staphylococcus aureus pI258 arsenate reductase (ArsC) H62Q mutant


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1LJLPDB ENTRY 1LJL

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18100 MM TRIS/HCL, PH 8.0, 10 MM DTT, 42.5 % (WT/VOL) POLYETHYLENE GLYCOL 4000
Crystal Properties
Matthews coefficientSolvent content
1.6926.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.662α = 90
b = 33.226β = 90
c = 100.601γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-02-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.51589.20.0320.84.916688
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.55910.226.35

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LJL1.514.91578684788.60.1850.1840.218RANDOM13.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.318
r_dihedral_angle_4_deg19.64
r_dihedral_angle_3_deg11.154
r_dihedral_angle_1_deg6.172
r_scangle_it2.773
r_scbond_it1.731
r_angle_refined_deg1.192
r_mcangle_it1.131
r_mcbond_it0.623
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.318
r_dihedral_angle_4_deg19.64
r_dihedral_angle_3_deg11.154
r_dihedral_angle_1_deg6.172
r_scangle_it2.773
r_scbond_it1.731
r_angle_refined_deg1.192
r_mcangle_it1.131
r_mcbond_it0.623
r_nbtor_refined0.304
r_nbd_refined0.199
r_symmetry_vdw_refined0.177
r_symmetry_hbond_refined0.134
r_xyhbond_nbd_refined0.118
r_chiral_restr0.081
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1020
Nucleic Acid Atoms
Solvent Atoms164
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing