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Staphylococcus aureus pI258 arsenate reductase (ArsC) H62Q mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LJL PDB ENTRY 1LJL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 100 MM TRIS/HCL, PH 8.0, 10 MM DTT, 42.5 % (WT/VOL) POLYETHYLENE GLYCOL 4000
Crystal Properties Matthews coefficient Solvent content 1.69 26.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.662 α = 90 b = 33.226 β = 90 c = 100.601 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 15 89.2 0.03 20.8 4.9 16688
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 91 0.22 6.3 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1LJL 1.5 14.9 15786 847 88.6 0.185 0.184 0.1819 0.218 0.2155 RANDOM 13.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.318 r_dihedral_angle_4_deg 19.64 r_dihedral_angle_3_deg 11.154 r_dihedral_angle_1_deg 6.172 r_scangle_it 2.773 r_scbond_it 1.731 r_angle_refined_deg 1.192 r_mcangle_it 1.131 r_mcbond_it 0.623 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.318 r_dihedral_angle_4_deg 19.64 r_dihedral_angle_3_deg 11.154 r_dihedral_angle_1_deg 6.172 r_scangle_it 2.773 r_scbond_it 1.731 r_angle_refined_deg 1.192 r_mcangle_it 1.131 r_mcbond_it 0.623 r_nbtor_refined 0.304 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1020 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing