☰ Navigation Tabs
STRUCTURE OF HUMAN LAMBDA-6 LIGHT CHAIN DIMER WIL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DCL MCG (1DCL): USED ONLY VL DIMER WITH CDR LOOPS DELETED.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 1.8M AMMONIUM SULPHATE, 0.1 M SODIUM CITRATE PH 5.6,
0.01 M CADMIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2 38.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.9 α = 90 b = 147.9 β = 90 c = 46.6 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 1998-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 97.6 0.04 48 21.8 21478 -3 16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 96.4 0.232 19 9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT MCG (1DCL): USED ONLY VL DIMER WITH CDR LOOPS DELETED. 1.8 8 3 17271 1689 96.5 0.289 0.2925 0.351 0.3549 RANDOM 25.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.28 -2.21 -2.28 4.56
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.5 x_mcangle_it 1.74 x_scangle_it 1.68 x_angle_deg 1.5 x_scbond_it 1.16 x_mcbond_it 1.02 x_improper_angle_d 0.78 x_bond_d 0.007 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 25.5 x_mcangle_it 1.74 x_scangle_it 1.68 x_angle_deg 1.5 x_scbond_it 1.16 x_mcbond_it 1.02 x_improper_angle_d 0.78 x_bond_d 0.007 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1612 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing CNS refinement