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Vps36 N-terminal PH domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.5 1M AMSO4, 0.2M NACL, 6% GLYCEROL 0.1M TRIS PH 9.5
Crystal Properties Matthews coefficient Solvent content 2.8 48.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.451 α = 90 b = 88.375 β = 90 c = 45.888 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TORROIDAL MIRROR 2005-10-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 44.19 100 0.1 5.34 5.54 31078 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.39 1.55 3.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 44.19 29476 1556 100 0.193 0.191 0.191 0.228 0.2276 RANDOM 22.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.25 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.289 r_dihedral_angle_4_deg 15.752 r_dihedral_angle_3_deg 13.157 r_dihedral_angle_1_deg 7.485 r_scangle_it 4.593 r_scbond_it 2.881 r_mcangle_it 1.94 r_angle_refined_deg 1.479 r_mcbond_it 1.167 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.289 r_dihedral_angle_4_deg 15.752 r_dihedral_angle_3_deg 13.157 r_dihedral_angle_1_deg 7.485 r_scangle_it 4.593 r_scbond_it 2.881 r_mcangle_it 1.94 r_angle_refined_deg 1.479 r_mcbond_it 1.167 r_nbtor_refined 0.307 r_nbd_refined 0.229 r_symmetry_hbond_refined 0.174 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.12 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2145 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 10
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SnB phasing SHARP phasing REFMAC refinement