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Structure of Glutathione-S-Transferase mutant, R21L, from Schistosoma Haematobium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OE7 PDB ENTRY 1OE7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 10% PEG200, PBS PH7.4, 5MM MERCAPTOETHANOL, pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.68 53.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.716 α = 90 b = 148.716 β = 90 c = 148.716 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 20 99.1 0.06 10.2 22 25780 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.3 99.8 9.8 20.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OE7 2.26 105.41 24373 1309 99.8 0.218 0.215 0.2096 0.272 0.2639 RANDOM 34.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.823 r_dihedral_angle_4_deg 17.181 r_dihedral_angle_3_deg 16.348 r_dihedral_angle_1_deg 6.311 r_scangle_it 3.059 r_scbond_it 1.96 r_angle_refined_deg 1.508 r_mcangle_it 1.375 r_mcbond_it 0.818 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.823 r_dihedral_angle_4_deg 17.181 r_dihedral_angle_3_deg 16.348 r_dihedral_angle_1_deg 6.311 r_scangle_it 3.059 r_scbond_it 1.96 r_angle_refined_deg 1.508 r_mcangle_it 1.375 r_mcbond_it 0.818 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.239 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.208 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.106 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3318 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing