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Structure of the fluorescent protein asFP499 from Anemonia sulcata
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 30 PERCENT PEG 4000, 0.1 M TRIS PH 8.5, 0.2 M MAGNESIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 1.99 37.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.88 α = 90 b = 135.126 β = 106.93 c = 95.071 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 87.3 0.05 17.5 5.5 128068 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 81.4 0.19 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.82 50 128068 6741 87.3 0.248 0.245 0.2439 0.292 0.2899 RANDOM 23.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.61 -0.11 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.498 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 15.624 r_dihedral_angle_1_deg 5.229 r_angle_refined_deg 1.387 r_scangle_it 0.645 r_scbond_it 0.569 r_mcangle_it 0.373 r_mcbond_it 0.272 r_nbd_refined 0.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.498 r_dihedral_angle_4_deg 20.302 r_dihedral_angle_3_deg 15.624 r_dihedral_angle_1_deg 5.229 r_angle_refined_deg 1.387 r_scangle_it 0.645 r_scbond_it 0.569 r_mcangle_it 0.373 r_mcbond_it 0.272 r_nbd_refined 0.165 r_symmetry_vdw_refined 0.123 r_symmetry_hbond_refined 0.089 r_xyhbond_nbd_refined 0.08 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14224 Nucleic Acid Atoms Solvent Atoms 1563 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing