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Human Rabex-5 residues 1-74 in complex with Ubiquitin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 SITTING DROP 300 NL PLUS 300 NL 20 MG/ML PROTEIN SOLUTION 0.2 M LIS2SO4, 0.1 MES PH 6.5 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 3.07 59.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.9 α = 90 b = 81.9 β = 90 c = 55.1 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 96.1 0.04 43.11 18.5 8066 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 76.9 0.22 6 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 19.67 7655 392 100 0.184 0.183 0.2435 0.214 0.2785 RANDOM 66.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.64 -2.32 -4.64 6.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.947 r_dihedral_angle_4_deg 24.842 r_dihedral_angle_3_deg 19.987 r_dihedral_angle_1_deg 6.924 r_scangle_it 6.065 r_scbond_it 3.979 r_angle_refined_deg 2.38 r_mcangle_it 2.068 r_mcbond_it 1.306 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.947 r_dihedral_angle_4_deg 24.842 r_dihedral_angle_3_deg 19.987 r_dihedral_angle_1_deg 6.924 r_scangle_it 6.065 r_scbond_it 3.979 r_angle_refined_deg 2.38 r_mcangle_it 2.068 r_mcbond_it 1.306 r_nbtor_refined 0.312 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.162 r_symmetry_hbond_refined 0.089 r_bond_refined_d 0.029 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1070 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling HKL2Map phasing