☰ Navigation Tabs
PENICILLIN-BINDING PROTEIN 1A (PBP-1A) FROM STREPTOCOCCUS PNEUMONIAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C5W PDB ENTRY 2C5W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 13% PEG1000, 50MM NACL, 5MM ZNSO4, 50MM TRIS PH 7.0
Crystal Properties Matthews coefficient Solvent content 3.03 57.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.782 α = 90 b = 187.256 β = 90 c = 51.303 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.61 50 91.9 0.08 10.2 3.4 15084 2 72.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.61 2.77 72.4 0.3 3.5 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C5W 2.61 44.99 15917 779 96 0.24 0.24 0.2344 0.276 0.272 RANDOM 68.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -13.5 -21.92 35.42
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.1 c_scangle_it 5.49 c_mcangle_it 4.43 c_scbond_it 3.78 c_mcbond_it 2.69 c_angle_deg 1.4 c_improper_angle_d 0.82 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.1 c_scangle_it 5.49 c_mcangle_it 4.43 c_scbond_it 3.78 c_mcbond_it 2.69 c_angle_deg 1.4 c_improper_angle_d 0.82 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3125 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 7
Software Software Software Name Purpose CNS refinement XDS data reduction XSCALE data scaling PHASER phasing