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Membrane-bound glutamate carboxypeptidase II (GCPII) in complex with phosphate anion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.25 20 MM HEPES PH 7.25, 200 MM NACL, 5% (W/V) PEG 400 AND 15% (W/V) PEG 1500
Crystal Properties Matthews coefficient Solvent content 3.54 64.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.573 α = 90 b = 130.365 β = 90 c = 159.414 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 261 CCD MARRESEARCH 2003-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 47.14 42414 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.39 47.14 40228 1067 97.3 0.2 0.198 0.2032 0.251 0.2488 RANDOM 44.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 -2.73 1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.447 r_scangle_it 3.659 r_scbond_it 2.122 r_angle_refined_deg 1.714 r_mcangle_it 1.652 r_angle_other_deg 0.944 r_mcbond_it 0.883 r_symmetry_hbond_refined 0.341 r_symmetry_vdw_other 0.246 r_nbd_other 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.447 r_scangle_it 3.659 r_scbond_it 2.122 r_angle_refined_deg 1.714 r_mcangle_it 1.652 r_angle_other_deg 0.944 r_mcbond_it 0.883 r_symmetry_hbond_refined 0.341 r_symmetry_vdw_other 0.246 r_nbd_other 0.242 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.102 r_nbtor_other 0.091 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5155 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling