2C60

crystal structure of human mitogen-activated protein kinase kinase kinase 3 isoform 2 phox domain at 1.25 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP150 NANOLITRE SITTING DROPS, 0.2 KSCN, 20% PEG3350, 10% ETHYLENE GLYCOL
Crystal Properties
Matthews coefficientSolvent content
2.142.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.8α = 90
b = 42.3β = 106.6
c = 30.6γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2005-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2529.3293.80.0715.815.78264213
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.251.3588.10.265.252.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.2539.7225085133693.80.1660.1650.182RANDOM15.02
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.190.530.330.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.656
r_dihedral_angle_4_deg18.505
r_dihedral_angle_3_deg10.767
r_dihedral_angle_1_deg5.312
r_scangle_it4.725
r_scbond_it3.351
r_mcangle_it2.428
r_mcbond_it1.847
r_angle_refined_deg1.455
r_angle_other_deg0.749
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.656
r_dihedral_angle_4_deg18.505
r_dihedral_angle_3_deg10.767
r_dihedral_angle_1_deg5.312
r_scangle_it4.725
r_scbond_it3.351
r_mcangle_it2.428
r_mcbond_it1.847
r_angle_refined_deg1.455
r_angle_other_deg0.749
r_nbd_refined0.235
r_symmetry_vdw_other0.199
r_nbd_other0.191
r_nbtor_refined0.171
r_symmetry_hbond_refined0.155
r_symmetry_vdw_refined0.151
r_xyhbond_nbd_refined0.123
r_nbtor_other0.085
r_chiral_restr0.08
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms676
Nucleic Acid Atoms
Solvent Atoms128
Heterogen Atoms7

Software

Software
Software NamePurpose
XDSdata reduction
XDSdata scaling
SHELXDphasing
SHELXEphasing
REFMACrefinement