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crystal structure of human mitogen-activated protein kinase kinase kinase 3 isoform 2 phox domain at 1.25 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 150 NANOLITRE SITTING DROPS, 0.2 KSCN, 20% PEG3350, 10% ETHYLENE GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.1 42.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.8 α = 90 b = 42.3 β = 106.6 c = 30.6 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2005-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 29.32 93.8 0.07 15.81 5.78 26421 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.35 88.1 0.26 5.25 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.25 39.72 25085 1336 93.8 0.166 0.165 0.1763 0.182 0.1927 RANDOM 15.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.53 0.33 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.656 r_dihedral_angle_4_deg 18.505 r_dihedral_angle_3_deg 10.767 r_dihedral_angle_1_deg 5.312 r_scangle_it 4.725 r_scbond_it 3.351 r_mcangle_it 2.428 r_mcbond_it 1.847 r_angle_refined_deg 1.455 r_angle_other_deg 0.749
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.656 r_dihedral_angle_4_deg 18.505 r_dihedral_angle_3_deg 10.767 r_dihedral_angle_1_deg 5.312 r_scangle_it 4.725 r_scbond_it 3.351 r_mcangle_it 2.428 r_mcbond_it 1.847 r_angle_refined_deg 1.455 r_angle_other_deg 0.749 r_nbd_refined 0.235 r_symmetry_vdw_other 0.199 r_nbd_other 0.191 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.155 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.123 r_nbtor_other 0.085 r_chiral_restr 0.08 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 676 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 7
Software Software Software Name Purpose XDS data reduction XDS data scaling SHELXD phasing SHELXE phasing REFMAC refinement