☰ Navigation Tabs
Structure of casein kinase 1 gamma 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CSN PDB ID 2CSN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M NACACOD PH=6.5 20% PEG10K 0.2 M MGCL2, pH 6.50
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.959 α = 90 b = 97.088 β = 90 c = 185.914 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 46.48 99.1 0.07 11.93 4.04 66823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 93.3 0.48 2.39 3.71
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ID 2CSN 2.4 50 63360 3383 99.3 0.211 0.208 0.2161 0.257 0.2625 RANDOM 57.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.83 4.57 -1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.159 r_dihedral_angle_4_deg 21.796 r_dihedral_angle_3_deg 17.093 r_scangle_it 8.348 r_scbond_it 6.989 r_dihedral_angle_1_deg 6.417 r_mcangle_it 3.544 r_mcbond_it 2.211 r_angle_refined_deg 1.466 r_angle_other_deg 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.159 r_dihedral_angle_4_deg 21.796 r_dihedral_angle_3_deg 17.093 r_scangle_it 8.348 r_scbond_it 6.989 r_dihedral_angle_1_deg 6.417 r_mcangle_it 3.544 r_mcbond_it 2.211 r_angle_refined_deg 1.466 r_angle_other_deg 0.85 r_symmetry_hbond_refined 0.339 r_symmetry_vdw_other 0.285 r_nbd_refined 0.201 r_nbtor_refined 0.185 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.142 r_nbtor_other 0.09 r_chiral_restr 0.076 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9242 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing