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Human glutathione-S-transferase T1-1 W234R mutant, complex with S- hexylglutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C3N PDB ENTRY 2C3N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 HANGING-DROP VAPOR-DIFFUSION TECHNIQUE, 5 MICROLITRES OF RESERVOIR SOLUTION [35% (V/V) PEG 3350, 200 MM MG(NO3)2, 200 MM NAI AND 2 MM DITHIOTHREITOL] WERE MIXED WITH 5 MICROLITRES OF PROTEIN SOLUTION (10 MG/ML IN 10 MM TRIS-HCL PH 7.8, 15 % GLYCEROL), 1 MICROLITRE 100 MM CACL2 AND 1 MICROLITRE 20 MM S-HEXYLGLUTATHIONE
Crystal Properties Matthews coefficient Solvent content 2.22 44.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.499 α = 90 b = 109.683 β = 90 c = 171.048 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 30 90.5 0.07 15 1.8 82135 2.3 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 82.5 0.57 2.3 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C3N 1.85 28.98 82135 4328 97.8 0.224 0.223 0.2222 0.252 RANDOM 32.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.956 r_dihedral_angle_4_deg 12.529 r_dihedral_angle_3_deg 11.935 r_dihedral_angle_1_deg 3.693 r_scangle_it 3.564 r_scbond_it 2.209 r_angle_refined_deg 1.779 r_mcangle_it 1.278 r_mcbond_it 0.728 r_nbtor_refined 0.285
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.956 r_dihedral_angle_4_deg 12.529 r_dihedral_angle_3_deg 11.935 r_dihedral_angle_1_deg 3.693 r_scangle_it 3.564 r_scbond_it 2.209 r_angle_refined_deg 1.779 r_mcangle_it 1.278 r_mcbond_it 0.728 r_nbtor_refined 0.285 r_symmetry_hbond_refined 0.213 r_xyhbond_nbd_refined 0.146 r_nbd_refined 0.143 r_symmetry_vdw_refined 0.108 r_chiral_restr 0.028 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7676 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing