☰ Navigation Tabs
Human glutathione-S-transferase T1-1, apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LJR PDB ENTRY 1LJR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 HANGING DROP VAPOUR DIFFUSION TECHINQUE; 5 MICROLITRES OF RESERVOIR SOLUTION [35% (V/V) PEG 3350,200 MM MG(NO3)2, 200MM NAI, 2 MM DTT] WAS MIXED WITH 5 MICROLITRES OF PROTEIN SOLUTION (10 MG/ML IN 10 MM TRIS-HCL PH 7.8, 15 % GLYCEROL) AND 1 MICROLITRE OF 100 MM CACL2
Crystal Properties Matthews coefficient Solvent content 2.16 42.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 164.577 α = 90 b = 110.986 β = 90 c = 56.295 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 30 97.7 0.07 20.4 2.9 161402 2.3 22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.54 96.4 0.81 2.3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1LJR 1.5 30 154151 8125 97.7 0.216 0.214 0.2138 0.246 RANDOM 24.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.453 r_dihedral_angle_4_deg 14.895 r_dihedral_angle_3_deg 12.871 r_dihedral_angle_1_deg 4.872 r_scangle_it 3.808 r_scbond_it 2.403 r_mcangle_it 1.436 r_angle_refined_deg 1.33 r_mcbond_it 0.785 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.453 r_dihedral_angle_4_deg 14.895 r_dihedral_angle_3_deg 12.871 r_dihedral_angle_1_deg 4.872 r_scangle_it 3.808 r_scbond_it 2.403 r_mcangle_it 1.436 r_angle_refined_deg 1.33 r_mcbond_it 0.785 r_nbtor_refined 0.31 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.123 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7688 Nucleic Acid Atoms Solvent Atoms 719 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing