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Molecular basis for the recognition of phosphorylated and phosphoacetylated histone H3 by 14-3-3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QJA PDB ENTRY 1QJA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 100MM HEPES PH 7.0, 23% ETHYLENE GLYCOL
Crystal Properties Matthews coefficient Solvent content 3.2 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.135 α = 90 b = 72.375 β = 103.04 c = 71.171 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 72.5 77.9 0.09 5.5 3.8 37201 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 77.9 0.31 2.3 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QJA 2 69.34 35082 1890 77.5 0.258 0.255 0.2603 0.296 0.2921 RANDOM 14.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.68 5.05 -0.83 1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.058 r_dihedral_angle_4_deg 21.303 r_dihedral_angle_3_deg 20.192 r_dihedral_angle_1_deg 6.249 r_scangle_it 2.69 r_scbond_it 1.756 r_angle_refined_deg 1.511 r_mcangle_it 1.231 r_mcbond_it 0.714 r_symmetry_vdw_refined 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.058 r_dihedral_angle_4_deg 21.303 r_dihedral_angle_3_deg 20.192 r_dihedral_angle_1_deg 6.249 r_scangle_it 2.69 r_scbond_it 1.756 r_angle_refined_deg 1.511 r_mcangle_it 1.231 r_mcbond_it 0.714 r_symmetry_vdw_refined 0.336 r_symmetry_hbond_refined 0.332 r_xyhbond_nbd_refined 0.32 r_nbtor_refined 0.301 r_nbd_refined 0.291 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3732 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing