☰ Navigation Tabs
apo form of the TPR domain of the pex5p receptor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.72 54.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.47 α = 71.17 b = 85.55 β = 89.99 c = 88.89 γ = 73.43
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 95.9 0.14 6.31 2.2 47257 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 85.9 0.54 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 19.54 44893 2363 96.5 0.265 0.263 0.2944 0.309 0.3071 RANDOM 21.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 -1.4 -0.37 6.45 -0.8 -3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.28 r_dihedral_angle_3_deg 19.54 r_dihedral_angle_4_deg 17.644 r_dihedral_angle_1_deg 6.193 r_scangle_it 1.455 r_angle_refined_deg 1.39 r_scbond_it 1.082 r_angle_other_deg 0.83 r_mcangle_it 0.737 r_mcbond_it 0.533
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.28 r_dihedral_angle_3_deg 19.54 r_dihedral_angle_4_deg 17.644 r_dihedral_angle_1_deg 6.193 r_scangle_it 1.455 r_angle_refined_deg 1.39 r_scbond_it 1.082 r_angle_other_deg 0.83 r_mcangle_it 0.737 r_mcbond_it 0.533 r_nbd_refined 0.238 r_symmetry_vdw_other 0.206 r_nbd_other 0.189 r_nbtor_refined 0.187 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.169 r_nbtor_other 0.089 r_chiral_restr 0.072 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9406 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing