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Structure of PDI-related Chaperone, Wind with his-tag on C-terminus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OVN PDB ENTRY 1OVN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 PROTEIN: 15.0MG/ML WIND IN 5MM HEPES PH7.5, 25MM NACL, 0.0025%(V/V) BETA-MERCAPTOETHANOL RESERVOIR: 0.1M MES PH6.1, 50MM NACL, 18%(V/V) PEG 400 CRYO: 0.1M MES PH6.1, 25%(V/V) PEG 400, 10%(V/V)GLYCEROL, 50MM NACL, pH 6.20
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.782 α = 90 b = 50.368 β = 112.19 c = 98.675 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 20 98.3 0.04 20.05 4.11 19292 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.45 99.2 0.11 9.46 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OVN 2.35 20 19292 1044 98.4 0.23 0.226 0.2234 0.293 0.2918 RANDOM 14.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.09 -0.94 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.319 r_dihedral_angle_3_deg 17.187 r_dihedral_angle_4_deg 12.718 r_dihedral_angle_1_deg 7.971 r_scangle_it 4.082 r_scbond_it 2.895 r_angle_refined_deg 2.057 r_mcangle_it 1.503 r_mcbond_it 0.956 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.319 r_dihedral_angle_3_deg 17.187 r_dihedral_angle_4_deg 12.718 r_dihedral_angle_1_deg 7.971 r_scangle_it 4.082 r_scbond_it 2.895 r_angle_refined_deg 2.057 r_mcangle_it 1.503 r_mcbond_it 0.956 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.296 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.228 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.141 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3287 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing