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Structure of the MGC45594 gene product
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QOR PDB ENTRY 1QOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.1 0.1 M BICINE PH=9.1 24% PEG 10K, pH 9.10
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.164 α = 90 b = 82.137 β = 112.54 c = 73.905 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 46.5 97.7 0.11 11.24 4.89 116573
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.55 96.1 0.54 2.27 3.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QOR 1.45 50 110704 5848 97.7 0.166 0.163 0.1747 0.216 0.2268 RANDOM 16.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 -1.03 -0.54 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.982 r_dihedral_angle_4_deg 17.935 r_dihedral_angle_3_deg 12.835 r_scangle_it 7.07 r_dihedral_angle_1_deg 6.264 r_scbond_it 5.618 r_mcangle_it 4.491 r_mcbond_it 3.605 r_angle_refined_deg 1.764 r_angle_other_deg 0.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.982 r_dihedral_angle_4_deg 17.935 r_dihedral_angle_3_deg 12.835 r_scangle_it 7.07 r_dihedral_angle_1_deg 6.264 r_scbond_it 5.618 r_mcangle_it 4.491 r_mcbond_it 3.605 r_angle_refined_deg 1.764 r_angle_other_deg 0.903 r_symmetry_vdw_other 0.267 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.192 r_nbd_other 0.185 r_nbtor_refined 0.184 r_symmetry_hbond_refined 0.165 r_chiral_restr 0.107 r_nbtor_other 0.089 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5163 Nucleic Acid Atoms Solvent Atoms 674 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing