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Homodimer of CrkL-SH3C domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BZX PDB ENTRY 2BZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.01 M MGCL2, 5% W/V PEG 8000, 0.2 M KCL2, 0.05 M MES PH 5.6
Crystal Properties Matthews coefficient Solvent content 3.93 68.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.317 α = 90 b = 71.317 β = 90 c = 146.428 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2003-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.7 0.16 16.74 28 8176 80
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 1 1.09 28.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 2BZX 2.5 20 8123 420 99.6 0.263 0.263 0.2629 0.309 0.2527 RANDOM 43.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.854 -4.963 -3.854 7.709
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 5.443 c_mcangle_it 3.924 c_scbond_it 3.8 c_mcbond_it 2.396 c_angle_deg 1.83 c_bond_d 0.014 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 5.443 c_mcangle_it 3.924 c_scbond_it 3.8 c_mcbond_it 2.396 c_angle_deg 1.83 c_bond_d 0.014 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing