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Atomic model of CrkL-SH3C monomer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UEC PDB ENTRY 1UEC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.7M AMMONIUM SULPHATE, 25.5% W/V PEG 8000, 0.085M SODIUM CACODYLATE PH6.5, 15% V/V GLYCEROL, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.75 54.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.285 α = 90 b = 53.285 β = 90 c = 51.193 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2003-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 99.6 0.1 34.3 38.8 2035 87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 99.5 1 3.2 26.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1UEC 2.8 20 1 2015 101 99.9 0.3173 0.3173 0.2932 0.3743 0.2572 RANDOM 73.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -11.813 -11.813 23.626
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 7.28 c_mcangle_it 5.59 c_scbond_it 5.28 c_mcbond_it 3.39 c_angle_deg 1.9815 c_bond_d 0.011707 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 7.28 c_mcangle_it 5.59 c_scbond_it 5.28 c_mcbond_it 3.39 c_angle_deg 1.9815 c_bond_d 0.011707 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 474 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing