2BZ7

Oxidized and reduced structures of a mutant Plastocyanin of fern


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.52.6 M AMMONIUM SULPHATE 0.1M SODIUM ACETATE PH 4.5
Crystal Properties
Matthews coefficientSolvent content
2.140.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.921α = 90
b = 72.921β = 90
c = 29.53γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2005-05-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM14ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7621.5799.80.0533.9110.89909520.07
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.761.781000.169.4810.89

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1KDJ1.7663.12865242899.80.1930.1910.24RANDOM31.81
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.41-1.71-3.415.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.995
r_dihedral_angle_3_deg15.939
r_dihedral_angle_1_deg6.249
r_scangle_it3.254
r_scbond_it2.21
r_angle_refined_deg1.505
r_mcangle_it1.394
r_mcbond_it0.987
r_nbtor_refined0.309
r_nbd_refined0.211
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.995
r_dihedral_angle_3_deg15.939
r_dihedral_angle_1_deg6.249
r_scangle_it3.254
r_scbond_it2.21
r_angle_refined_deg1.505
r_mcangle_it1.394
r_mcbond_it0.987
r_nbtor_refined0.309
r_nbd_refined0.211
r_symmetry_vdw_refined0.195
r_xyhbond_nbd_refined0.144
r_symmetry_hbond_refined0.136
r_chiral_restr0.109
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms761
Nucleic Acid Atoms
Solvent Atoms87
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing