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CRYSTAL STRUCTURE OF ACHBP FROM APLYSIA CALIFORNICA in complex with methyllycaconitine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BYN PDB ENTRY 2BYN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 22% PEG 4K, 0.1 M TRIS, PH 7.5, 0.4 M MG2CL
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.267 α = 90 b = 135.776 β = 99.46 c = 147.286 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 72 100 0.08 0.079 11.3 3.7 95739 45.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.51 100 0.48 0.484 2.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BYN 2.45 20 93613 1916 100 0.194 0.193 0.2118 0.232 0.2427 RANDOM 40.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 -0.31 0.06 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.666 r_dihedral_angle_4_deg 19.958 r_dihedral_angle_3_deg 15.303 r_dihedral_angle_1_deg 6.383 r_angle_refined_deg 1.369 r_mcangle_it 1.126 r_mcbond_it 0.954 r_scangle_it 0.827 r_angle_other_deg 0.734 r_scbond_it 0.573
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.666 r_dihedral_angle_4_deg 19.958 r_dihedral_angle_3_deg 15.303 r_dihedral_angle_1_deg 6.383 r_angle_refined_deg 1.369 r_mcangle_it 1.126 r_mcbond_it 0.954 r_scangle_it 0.827 r_angle_other_deg 0.734 r_scbond_it 0.573 r_symmetry_hbond_refined 0.236 r_nbd_other 0.189 r_nbd_refined 0.186 r_nbtor_refined 0.179 r_symmetry_vdw_other 0.171 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.136 r_nbtor_other 0.084 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16760 Nucleic Acid Atoms Solvent Atoms 556 Heterogen Atoms 490
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing