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Crystal Structure of Psathyrella Velutina Lectin at 1.5A Resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BWM PDB ENTRY 2BWM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 2.2M (NH4)2SO4,0.1M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.2 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.828 α = 90 b = 142.219 β = 92.1 c = 52.161 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2005-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 21.15 96.3 0.07 5.3 3.6 115491
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 90.1 0.26 3.3 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BWM 1.5 52.13 109647 5801 96.1 0.159 0.158 0.182 RANDOM 10.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.22 0.51 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.303 r_dihedral_angle_4_deg 13.011 r_dihedral_angle_3_deg 12.974 r_dihedral_angle_1_deg 6.216 r_scangle_it 3.46 r_scbond_it 2.473 r_angle_refined_deg 1.655 r_mcangle_it 1.631 r_angle_other_deg 1.541 r_mcbond_it 1.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.303 r_dihedral_angle_4_deg 13.011 r_dihedral_angle_3_deg 12.974 r_dihedral_angle_1_deg 6.216 r_scangle_it 3.46 r_scbond_it 2.473 r_angle_refined_deg 1.655 r_mcangle_it 1.631 r_angle_other_deg 1.541 r_mcbond_it 1.092 r_mcbond_other 0.305 r_symmetry_vdw_other 0.261 r_nbd_other 0.201 r_symmetry_hbond_refined 0.198 r_nbd_refined 0.188 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.168 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.129 r_nbtor_other 0.089 r_metal_ion_refined 0.064 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6076 Nucleic Acid Atoms Solvent Atoms 894 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing