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Structures of Three HIV-1 HLA-B5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Non-Progression
Crystallization Crystal Properties Matthews coefficient Solvent content 2.43 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.81 α = 90 b = 82.64 β = 90 c = 110.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.3 0.01 8 32321 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2 66.23 30389 1618 99.2 0.208 0.204 0.2032 0.267 RANDOM 19.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -1 1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.339 r_dihedral_angle_4_deg 18.595 r_dihedral_angle_3_deg 17.851 r_dihedral_angle_1_deg 6.696 r_scangle_it 4.804 r_scbond_it 3.239 r_mcangle_it 1.982 r_angle_refined_deg 1.902 r_mcbond_it 1.335 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.339 r_dihedral_angle_4_deg 18.595 r_dihedral_angle_3_deg 17.851 r_dihedral_angle_1_deg 6.696 r_scangle_it 4.804 r_scbond_it 3.239 r_mcangle_it 1.982 r_angle_refined_deg 1.902 r_mcbond_it 1.335 r_nbtor_refined 0.297 r_nbd_refined 0.241 r_symmetry_hbond_refined 0.237 r_xyhbond_nbd_refined 0.215 r_symmetry_vdw_refined 0.183 r_chiral_restr 0.17 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3119 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement